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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140872938_140877404_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140872938 - 140877404
Intron Length:
4467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
ATTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACAT
Flanking Amino Acid:
SYGTIVKLKRDDLKATLTAK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
71.1
37.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.4
0.73
0.8
74.9
39.5
Minor 5ss
37.7
-1.4
3.1
39.8
46.2
Minor BPS
50.2
0.09
2
75.18
41.1

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021059
140861317 - 140879454
18138
ENSAPLT00000015725
140862047 - 140885048
23002
ENSAPLT00000024700
140861317 - 140880310
18994