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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140872938_140879106_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140872938 - 140879106
Intron Length:
6169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACAT
Flanking Amino Acid:
SRLQDYRQAEDDLKATLTAK
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.4
0.73
0.8
74.9
39.5
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
50.2
0.09
2
75.18
41.1

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015728
140862047 - 140879454
17408