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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140877474_140879106_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140877474 - 140879106
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTAGTGACCT
Flanking Amino Acid:
SRLQDYRQAEVDRLEAKVVE
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
46.8
-0.1
2.5
77.85
44.1

Associated Gene:

Gene:
FAM92A
Ensembl Gene ID:
ENSAPLG00000015090
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015725
140862047 - 140885048
23002
ENSAPLT00000024700
140861317 - 140880310
18994
ENSAPLT00000021059
140861317 - 140879454
18138