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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1409184_1410167_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1409184 - 1410167
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCGA
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ATTTCCTCACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
61.9
44.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
80
0.67
0.9
71.8
38.1
Minor 5ss
35.6
-1.6
2.9
42.1
44.5
Minor BPS
67.3
0.62
1.8
86.92
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017641
1400176 - 1410617
10442