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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14098549_14099891_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14098549 - 14099891
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTGAAACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAAC
Flanking Amino Acid:
DGDLRNRRFEQAQHMFRQAM
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
64.7
0.33
1
56.9
42.7
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
52.5
0.06
1.5
60.74
38.4

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257
ENSAPLT00000047719
13864772 - 14307028
442257