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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140988659_140989386_F

Intron Information:

Intron Rank:
127177
Intron Class:
major
Intron Phase:
Intron Coordinates:
140988659 - 140989386
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
ACTGACCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AGTTAATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
74.4
37.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
69
0.43
0.9
63.2
38.6
Minor 5ss
33
-1.9
3.1
42.1
44.8
Minor BPS
52.5
0.16
1.8
72.57
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018563
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028827
140988242 - 140990445
2204