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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14100275_14110709_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14100275 - 14110709
Intron Length:
10435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCATTTTAACA
Flanking Amino Acid:
GKRLSIQLRKGTEGLGFSIT
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
67.8
43.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.2
0.72
0.9
77.8
34.9
Minor 5ss
31.1
-2.2
3.3
41.9
44.9
Minor BPS
70.7
0.65
1.2
75.15
36.6

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019870
13864772 - 14307028
442257
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000021470
13864772 - 14307028
442257