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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1410226_1410415_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1410226 - 1410415
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GCCTCCCAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.8
0.58
0.8
69.7
30.3
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
48.3
-0
2
64.84
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017641
1400176 - 1410617
10442