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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14110850_14112207_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14110850 - 14112207
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTAATATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTGTTATTAACT
Flanking Amino Acid:
RLKAGDRLIETKDWWSVPED
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
68.6
0.42
1
59.3
46
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
67.2
0.62
1.6
80.43
41.6

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000003606
13864772 - 14305998
441227