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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14110850_14112449_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14110850 - 14112449
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTATCAAATT
Flanking Amino Acid:
RLKAGDRLIEVNGVDLTGKT
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.6
0.67
0.8
74.8
33.6
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
46.5
-0.1
2.1
68.93
42.6

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000038237
13864772 - 14307028
442257