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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14112579_14116453_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14112579 - 14116453
Intron Length:
3875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTAAA
5'SS Class:
major
3'SS Sequence:
TTACTTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
QEETFHPRELNAEQNQSQIP
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.2
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.7
0.67
0.8
78.4
30.2
Minor 5ss
28.7
-2.4
2.8
29.6
38
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257