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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14112579_14129056_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14112579 - 14129056
Intron Length:
16478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTAAA
5'SS Class:
major
3'SS Sequence:
ATCTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTTCTATAATC
Flanking Amino Acid:
QEETFHPRELKAEEEELVLT
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.2
34.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.5
0.53
1
69.1
36.5
Minor 5ss
28.7
-2.4
2.8
29.6
38
Minor BPS
66.4
0.5
1.6
74.78
36.3

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038237
13864772 - 14307028
442257