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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141192521_141222620_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141192521 - 141222620
Intron Length:
30100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATGAAT
Flanking Amino Acid:
TPVDQYRKQIGKQDYKKTRP
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81
0.7
0.8
74.1
36.7
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
54.8
0.23
2
83.16
37.1

Associated Gene:

Gene:
TRIQK
Ensembl Gene ID:
ENSAPLG00000021039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028507
141171343 - 141232261
60919