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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141222707_141232147_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141222707 - 141232147
Intron Length:
9441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTGTTTTACT
Flanking Amino Acid:
EAKKTALGVKEVALVLAAIL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
39.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
93.2
0.97
0.6
88.6
21.1
Minor 5ss
39.3
-1.2
3.7
57.8
47.2
Minor BPS
63.9
0.52
2.1
87.77
37.8

Associated Gene:

Gene:
TRIQK
Ensembl Gene ID:
ENSAPLG00000021039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028507
141171343 - 141232261
60919