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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141333055_141333301_F

Intron Information:

Intron Rank:
130223
Intron Class:
major
Intron Phase:
Intron Coordinates:
141333055 - 141333301
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
TCCAACTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGTTCACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
64.5
39.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.9
0.56
0.9
65
40.8
Minor 5ss
34.5
-1.8
3.4
47.8
43
Minor BPS
65.2
0.55
2
87.42
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022179
141331059 - 141337428
6370
ENSAPLT00000019537
141331059 - 141337428
6370