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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141333484_141337126_F

Intron Information:

Intron Rank:
130225
Intron Class:
major
Intron Phase:
Intron Coordinates:
141333484 - 141337126
Intron Length:
3643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AAAAGCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
42.5
-0.4
2.2
57.1
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020039
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022179
141331059 - 141337428
6370
ENSAPLT00000019537
141331059 - 141337428
6370