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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141360582_141363980_R

Intron Information:

Intron Rank:
151426
Intron Class:
major
Intron Phase:
Intron Coordinates:
141360582 - 141363980
Intron Length:
3399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ACCTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.7
0.71
0.8
77.3
31.5
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
52
0.14
1.8
66.84
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029026
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039507
141359686 - 141364185
4500