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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141365228_141380434_F

Intron Information:

Intron Rank:
145707
Intron Class:
major
Intron Phase:
Intron Coordinates:
141365228 - 141380434
Intron Length:
15207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
54.6
0.22
1.8
76.72
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026140
141365105 - 141399289
34185