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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141380543_141395851_F

Intron Information:

Intron Rank:
145708
Intron Class:
major
Intron Phase:
Intron Coordinates:
141380543 - 141395851
Intron Length:
15309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.4
0.77
0.8
81.1
29.5
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
63.7
0.43
1.7
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026140
141365105 - 141399289
34185
ENSAPLT00000042252
141307810 - 141399289
91480