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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141395990_141398025_F

Intron Information:

Intron Rank:
145709
Intron Class:
major
Intron Phase:
Intron Coordinates:
141395990 - 141398025
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCAAT
5'SS Class:
major
3'SS Sequence:
CACTGAGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTCCCTCCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
75.7
35.3
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
67
0.38
1
61.6
43.3
Minor 5ss
41.7
-0.9
2.8
56.4
48
Minor BPS
43.6
-0.4
2.2
66.17
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044995
141307810 - 141399289
91480
ENSAPLT00000042252
141307810 - 141399289
91480
ENSAPLT00000026140
141365105 - 141399289
34185