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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141462705_141463797_R

Intron Information:

Intron Rank:
147375
Intron Class:
major
Intron Phase:
Intron Coordinates:
141462705 - 141463797
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTCCCCATACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
82.4
0.73
0.8
81.2
30.8
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
48.7
-0
2.3
78.93
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039124
141461922 - 141463977
2056