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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141471151_141473501_F

Intron Information:

Intron Rank:
142645
Intron Class:
major
Intron Phase:
Intron Coordinates:
141471151 - 141473501
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTAAGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.6
33.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.3
0.59
1
74.8
38.9
Minor 5ss
27.6
-2.6
2.9
32.2
42.5
Minor BPS
68.7
0.45
1.6
74.22
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026886
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028037
141471025 - 141482571
11547