About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141473593_141482116_F

Intron Information:

Intron Rank:
142646
Intron Class:
major
Intron Phase:
Intron Coordinates:
141473593 - 141482116
Intron Length:
8524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAACTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.8
0.74
0.7
78.3
30.6
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
47.7
-0.2
2
67.38
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026886
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028132
141421422 - 141483358
61937
ENSAPLT00000028037
141471025 - 141482571
11547