About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14147531_14152432_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14147531 - 14152432
Intron Length:
4902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATAAATG
Flanking Amino Acid:
AKAAINESTDCTLSPDVDPV
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.7
0.71
0.7
75.8
26.4
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
45.2
-0.5
2.3
55.74
46.1

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257
ENSAPLT00000047719
13864772 - 14307028
442257
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257