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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14152585_14160092_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14152585 - 14160092
Intron Length:
7508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
CTAAATCACTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTCCCTAAAT
Flanking Amino Acid:
TRKSKSMDLGSSPTRDVGPS
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73
31.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
51
0.02
1.1
53.5
40.3
Minor 5ss
30.8
-2.2
3.3
41.6
40.4
Minor BPS
68.7
0.66
1.8
86.25
39.3

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003604
13864772 - 14305998
441227