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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141552133_141554930_R

Intron Information:

Intron Rank:
152262
Intron Class:
major
Intron Phase:
Intron Coordinates:
141552133 - 141554930
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTTCCTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
83.3
0.75
0.8
80.9
35.8
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
79.9
0.93
1.4
87.86
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029493
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037176
141551509 - 141557151
5643