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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141608488_141650614_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141608488 - 141650614
Intron Length:
42127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GGGAAATAAAAT
Flanking Amino Acid:
RKKGNFEFCQDRTEKHSTMP
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72
0.5
1.1
64.5
45.9
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
38.8
-0.7
2
50.3
42.3

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041253
141608315 - 141699608
91294