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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141650753_141654512_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141650753 - 141654512
Intron Length:
3760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTATTTTATCT
Flanking Amino Acid:
PRTSSFTPTTLTNGTSHSPT
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
69
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
37.1
-1.5
2.7
43.2
43.9
Minor BPS
52.6
0.16
1.7
67.27
44.2

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011836
141623506 - 141699608
76103
ENSAPLT00000041253
141608315 - 141699608
91294
ENSAPLT00000038189
141589210 - 141699608
110399