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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141672193_141673458_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141672193 - 141673458
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
AACACTGTAAAC
Flanking Amino Acid:
RDLRDRNRPMGLHGTRQEEM
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
81.3
0.7
0.9
79.6
32.4
Minor 5ss
32
-2.1
3.4
39.2
46.1
Minor BPS
44.7
-0.4
2
51.75
39.1

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041253
141608315 - 141699608
91294
ENSAPLT00000038189
141589210 - 141699608
110399
ENSAPLT00000011836
141623506 - 141699608
76103