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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141673545_141674205_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
141673545 - 141674205
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
CTGCTGTGACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
WAEEWKHLDHLLNCIMDMVE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
72.9
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
57.1
0.16
1
50.9
42.7
Minor 5ss
34.3
-1.8
3.7
52.4
44.6
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011836
141623506 - 141699608
76103
ENSAPLT00000041253
141608315 - 141699608
91294
ENSAPLT00000038189
141589210 - 141699608
110399