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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141683386_141689299_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141683386 - 141689299
Intron Length:
5914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTGTGCTGATGA
Flanking Amino Acid:
YVPEEIWKKAEEAVNEVKRQ
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
74.1
0.54
0.8
68.4
31.9
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
41
-0.6
2.2
51.39
46.4

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041253
141608315 - 141699608
91294
ENSAPLT00000038189
141589210 - 141699608
110399
ENSAPLT00000011836
141623506 - 141699608
76103