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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141689491_141698695_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141689491 - 141698695
Intron Length:
9205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTTCTGCCATC
Flanking Amino Acid:
VINQQEDSSESCWNCGRKAS
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
42.6
-0.6
2.4
60.26
39.9

Associated Gene:

Gene:
RUNX1T1
Ensembl Gene ID:
ENSAPLG00000011326
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041253
141608315 - 141699608
91294
ENSAPLT00000038189
141589210 - 141699608
110399
ENSAPLT00000011836
141623506 - 141699608
76103