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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141766487_141776629_F

Intron Information:

Intron Rank:
142750
Intron Class:
major
Intron Phase:
Intron Coordinates:
141766487 - 141776629
Intron Length:
10143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATCACTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
75.4
0.88
1.4
88.46
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047728
141766404 - 141777739
11336
ENSAPLT00000041116
141766404 - 141777739
11336