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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141873230_141873318_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141873230 - 141873318
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACTACCTTATCA
Flanking Amino Acid:
HIDVLLAHCKASLIKAMQYG
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
63.5
0.42
1.7
70.58
41.5

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230