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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141879838_141883413_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141879838 - 141883413
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCATTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
EYKYKTEDNCQSLKQVKIVS
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77
34.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.8
79.7
32
Minor 5ss
43.9
-0.7
2.9
59
45.5
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230