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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14188999_14291725_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14188999 - 14291725
Intron Length:
102727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACTTC
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCATTTCTATCT
Flanking Amino Acid:
ERIRMKQEQESNRSTPNNHD
Intron Amino Acid Position:
1053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.5
40.4
Major BPS
76.2
0.65
1
67
39.8
Major PPT
85.5
0.8
0.6
84.8
22.9
Minor 5ss
46.4
-0.4
3.3
66.9
44.7
Minor BPS
48.7
-0
1.9
68.58
42.6

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015447
13864772 - 14305998
441227