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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141896072_141899149_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141896072 - 141899149
Intron Length:
3078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
LLYSTGARTQVACLISSALI
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230