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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141899264_141901381_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141899264 - 141901381
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
AACAACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
KFKYTVDDNQEFLAHGLSNV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67.1
0.39
1
58.4
41.7
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230