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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141901530_141902368_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141901530 - 141902368
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGGAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
GLEVVGHIPEGLPPPKLPPM
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.6
42.5
Major BPS
47.3
-0.1
1.3
43.5
39.2
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
36.7
-1.5
3.2
41.6
45.2
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230