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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141913751_141921466_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141913751 - 141921466
Intron Length:
7716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTACACTTACTA
Flanking Amino Acid:
AVSFLGGIIQVAMFMLQLGS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
53.3
0.1
1.8
66.88
39.3

Associated Gene:

Gene:
SLC26A7
Ensembl Gene ID:
ENSAPLG00000011993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012485
141871233 - 141925462
54230