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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141971317_141971871_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141971317 - 141971871
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TAACTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
EEYSGKPITLVYMRHAYGLG
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
69.1
41.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79
0.65
0.8
77.6
36.2
Minor 5ss
38.3
-1.3
3.3
50
46.2
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
OTUD6B
Ensembl Gene ID:
ENSAPLG00000012136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012645
141969762 - 141978281
8520