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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141971979_141972581_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141971979 - 141972581
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATGCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTGTTGAATT
Flanking Amino Acid:
NTAAWGGQLELRALSHILQT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.2
0.68
0.9
73.2
37.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
57.1
0.3
1.9
77.3
39.6

Associated Gene:

Gene:
OTUD6B
Ensembl Gene ID:
ENSAPLG00000012136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012645
141969762 - 141978281
8520