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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141972644_141972980_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141972644 - 141972980
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CCTTTCTCCACA
Flanking Amino Acid:
NPTTGDMYSREEFEKYCDDI
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
81.1
0.7
0.7
75.7
26.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
49.3
-0
2
62.43
44.3

Associated Gene:

Gene:
OTUD6B
Ensembl Gene ID:
ENSAPLG00000012136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012645
141969762 - 141978281
8520