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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141975948_141978157_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141975948 - 141978157
Intron Length:
2210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTTCTTTAACA
Flanking Amino Acid:
RQRKEKRELQAKIQGMKNAV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
72.9
36.2
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
79.9
0.94
1.1
79.83
36.4

Associated Gene:

Gene:
OTUD6B
Ensembl Gene ID:
ENSAPLG00000012136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012645
141969762 - 141978281
8520