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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_141995396_142001027_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141995396 - 142001027
Intron Length:
5632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GATTTTTCACCT
Flanking Amino Acid:
PPYLPDTSPRAELPPPYTAI
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
49.9
0.07
1.8
69.57
41.5

Associated Gene:

Gene:
PIP4P2
Ensembl Gene ID:
ENSAPLG00000012413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012935
141995290 - 142016851
21562
ENSAPLT00000027321
141995290 - 142016877
21588