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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142002716_142004214_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142002716 - 142004214
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTTCTTAACA
Flanking Amino Acid:
SRKIGCPRPNCRRIITLGPV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.5
0.48
1
66
38.8
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
80.3
0.95
1.1
81.3
34

Associated Gene:

Gene:
PIP4P2
Ensembl Gene ID:
ENSAPLG00000012413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027321
141995290 - 142016877
21588
ENSAPLT00000012935
141995290 - 142016851
21562