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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142004339_142015500_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142004339 - 142015500
Intron Length:
11162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
VCGHCGNTFLFFCWKCAASE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.7
0.71
0.9
77.9
34.9
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
PIP4P2
Ensembl Gene ID:
ENSAPLG00000012413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027321
141995290 - 142016877
21588