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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142009991_142015500_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142009991 - 142015500
Intron Length:
5510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
TLAKCPHCKKISSVGSALPR
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.7
0.71
0.9
77.9
34.9
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
PIP4P2
Ensembl Gene ID:
ENSAPLG00000012413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012935
141995290 - 142016851
21562