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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142031539_142032694_F

Intron Information:

Intron Rank:
134952
Intron Class:
major
Intron Phase:
Intron Coordinates:
142031539 - 142032694
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CATTCCTAATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
77
31.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
13.8
-4.2
3.7
22.9
37.7
Minor BPS
58.2
0.34
2
76.85
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047814
142030637 - 142033867
3231