About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142032781_142033836_F

Intron Information:

Intron Rank:
134953
Intron Class:
major
Intron Phase:
Intron Coordinates:
142032781 - 142033836
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GCTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
76.6
0.6
1
77.8
34.4
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
60.5
0.19
1.5
60.52
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047814
142030637 - 142033867
3231